{ "info": { "author": "Seldon Technologies Ltd.", "author_email": "hello@seldon.io", "bugtrack_url": null, "classifiers": [ "Intended Audience :: Science/Research", "License :: Other/Proprietary License", "Operating System :: OS Independent", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.8", "Programming Language :: Python :: 3.9", "Topic :: Scientific/Engineering" ], "description": "

\n \"Alibi\n

\n\n\n\n[![Build Status](https://github.com/SeldonIO/alibi-detect/workflows/CI/badge.svg?branch=master)][#build-status]\n[![Documentation Status](https://readthedocs.org/projects/alibi/badge/?version=latest)][#docs-package]\n[![codecov](https://codecov.io/gh/SeldonIO/alibi/branch/master/graph/badge.svg)](https://codecov.io/gh/SeldonIO/alibi)\n[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/alibi?logo=pypi&style=flat&color=blue)][#pypi-package]\n[![PyPI - Package Version](https://img.shields.io/pypi/v/alibi?logo=pypi&style=flat&color=orange)][#pypi-package]\n[![Conda (channel only)](https://img.shields.io/conda/vn/conda-forge/alibi?logo=anaconda&style=flat&color=orange)][#conda-forge-package]\n[![GitHub - License](https://img.shields.io/github/license/SeldonIO/alibi?logo=github&style=flat&color=green)][#github-license]\n[![Slack channel](https://img.shields.io/badge/chat-on%20slack-e51670.svg)][#slack-channel]\n\n\n\n\n[#github-license]: https://github.com/SeldonIO/alibi/blob/master/LICENSE\n[#pypi-package]: https://pypi.org/project/alibi/\n[#conda-forge-package]: https://anaconda.org/conda-forge/alibi\n[#docs-package]: https://docs.seldon.io/projects/alibi/en/stable/\n[#build-status]: https://github.com/SeldonIO/alibi/actions?query=workflow%3A%22CI%22\n[#slack-channel]: https://join.slack.com/t/seldondev/shared_invite/zt-vejg6ttd-ksZiQs3O_HOtPQsen_labg\n\n---\n\n[Alibi](https://docs.seldon.io/projects/alibi) is a Python library aimed at machine learning model inspection and interpretation.\nThe focus of the library is to provide high-quality implementations of black-box, white-box, local and global\nexplanation methods for classification and regression models.\n* [Documentation](https://docs.seldon.io/projects/alibi/en/stable/)\n\nIf you're interested in outlier detection, concept drift or adversarial instance detection, check out our sister project [alibi-detect](https://github.com/SeldonIO/alibi-detect).\n\n\n \n \n \n \n \n \n \n \n
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\n Anchor explanations for images\n
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\n Integrated Gradients for text\n
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\n Counterfactual examples\n
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\n Accumulated Local Effects\n
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\n\n## Table of Contents\n\n* [Installation and Usage](#installation-and-usage)\n* [Supported Methods](#supported-methods)\n * [Model Explanations](#model-explanations)\n * [Model Confidence](#model-confidence)\n * [Prototypes](#prototypes)\n * [References and Examples](#references-and-examples)\n* [Citations](#citations)\n\n## Installation and Usage\nAlibi can be installed from:\n\n- PyPI or GitHub source (with `pip`)\n- Anaconda (with `conda`/`mamba`)\n\n### With pip\n\n- Alibi can be installed from [PyPI](https://pypi.org/project/alibi):\n\n ```bash\n pip install alibi\n ```\n \n- Alternatively, the development version can be installed:\n ```bash\n pip install git+https://github.com/SeldonIO/alibi.git \n ```\n\n- To take advantage of distributed computation of explanations, install `alibi` with `ray`:\n ```bash\n pip install alibi[ray]\n ```\n\n- For SHAP support, install `alibi` as follows:\n ```bash\n pip install alibi[shap]\n ```\n\n### With conda \n\nTo install from [conda-forge](https://conda-forge.org/) it is recommended to use [mamba](https://mamba.readthedocs.io/en/stable/), \nwhich can be installed to the *base* conda enviroment with:\n\n```bash\nconda install mamba -n base -c conda-forge\n```\n\n- For the standard Alibi install:\n ```bash\n mamba install -c conda-forge alibi\n ```\n\n- For distributed computing support:\n ```bash\n mamba install -c conda-forge alibi ray\n ```\n\n- For SHAP support:\n ```bash\n mamba install -c conda-forge alibi shap\n ```\n\n### Usage\nThe alibi explanation API takes inspiration from `scikit-learn`, consisting of distinct initialize,\nfit and explain steps. We will use the [AnchorTabular](https://docs.seldon.io/projects/alibi/en/stable/methods/Anchors.html)\nexplainer to illustrate the API:\n\n```python\nfrom alibi.explainers import AnchorTabular\n\n# initialize and fit explainer by passing a prediction function and any other required arguments\nexplainer = AnchorTabular(predict_fn, feature_names=feature_names, category_map=category_map)\nexplainer.fit(X_train)\n\n# explain an instance\nexplanation = explainer.explain(x)\n```\n\nThe explanation returned is an `Explanation` object with attributes `meta` and `data`. `meta` is a dictionary\ncontaining the explainer metadata and any hyperparameters and `data` is a dictionary containing everything\nrelated to the computed explanation. For example, for the Anchor algorithm the explanation can be accessed\nvia `explanation.data['anchor']` (or `explanation.anchor`). The exact details of available fields varies\nfrom method to method so we encourage the reader to become familiar with the\n[types of methods supported](https://docs.seldon.io/projects/alibi/en/stable/overview/algorithms.html).\n \n\n## Supported Methods\nThe following tables summarize the possible use cases for each method.\n\n### Model Explanations\n| Method | Models | Explanations | Classification | Regression | Tabular | Text | Images | Categorical features | Train set required | Distributed |\n|:-------------------------------------------------------------------------------------------------------------|:------------:|:---------------------:|:--------------:|:----------:|:-------:|:----:|:------:|:--------------------:|:------------------:|:-----------:|\n| [ALE](https://docs.seldon.io/projects/alibi/en/stable/methods/ALE.html) | BB | global | \u2714 | \u2714 | \u2714 | | | | | |\n| [Partial Dependence](https://docs.seldon.io/projects/alibi/en/stable/methods/PartialDependence.html) | BB WB | global | \u2714 | \u2714 | \u2714 | | | \u2714 | | |\n| [PD Variance](https://docs.seldon.io/projects/alibi/en/stable/methods/PartialDependenceVariance.html) | BB WB | global | \u2714 | \u2714 | \u2714 | | | \u2714 | | |\n| [Permutation Importance](https://docs.seldon.io/projects/alibi/en/stable/methods/PermutationImportance.html) | BB | global | \u2714 | \u2714 | \u2714 | | | \u2714 | | |\n| [Anchors](https://docs.seldon.io/projects/alibi/en/stable/methods/Anchors.html) | BB | local | \u2714 | | \u2714 | \u2714 | \u2714 | \u2714 | For Tabular | |\n| [CEM](https://docs.seldon.io/projects/alibi/en/stable/methods/CEM.html) | BB* TF/Keras | local | \u2714 | | \u2714 | | \u2714 | | Optional | |\n| [Counterfactuals](https://docs.seldon.io/projects/alibi/en/stable/methods/CF.html) | BB* TF/Keras | local | \u2714 | | \u2714 | | \u2714 | | No | |\n| [Prototype Counterfactuals](https://docs.seldon.io/projects/alibi/en/stable/methods/CFProto.html) | BB* TF/Keras | local | \u2714 | | \u2714 | | \u2714 | \u2714 | Optional | |\n| [Counterfactuals with RL](https://docs.seldon.io/projects/alibi/en/stable/methods/CFRL.html) | BB | local | \u2714 | | \u2714 | | \u2714 | \u2714 | \u2714 | |\n| [Integrated Gradients](https://docs.seldon.io/projects/alibi/en/stable/methods/IntegratedGradients.html) | TF/Keras | local | \u2714 | \u2714 | \u2714 | \u2714 | \u2714 | \u2714 | Optional | |\n| [Kernel SHAP](https://docs.seldon.io/projects/alibi/en/stable/methods/KernelSHAP.html) | BB | local

global | \u2714 | \u2714 | \u2714 | | | \u2714 | \u2714 | \u2714 |\n| [Tree SHAP](https://docs.seldon.io/projects/alibi/en/stable/methods/TreeSHAP.html) | WB | local

global | \u2714 | \u2714 | \u2714 | | | \u2714 | Optional | |\n| [Similarity explanations](https://docs.seldon.io/projects/alibi/en/stable/methods/Similarity.html) | WB | local | \u2714 | \u2714 | \u2714 | \u2714 | \u2714 | \u2714 | \u2714 | |\n\n### Model Confidence\nThese algorithms provide **instance-specific** scores measuring the model confidence for making a\nparticular prediction.\n\n|Method|Models|Classification|Regression|Tabular|Text|Images|Categorical Features|Train set required|\n|:---|:---|:---:|:---:|:---:|:---:|:---:|:---:|:---|\n|[Trust Scores](https://docs.seldon.io/projects/alibi/en/stable/methods/TrustScores.html)|BB|\u2714| |\u2714|\u2714(1)|\u2714(2)| |Yes|\n|[Linearity Measure](https://docs.seldon.io/projects/alibi/en/stable/methods/LinearityMeasure.html)|BB|\u2714|\u2714|\u2714| |\u2714| |Optional|\n\nKey:\n - **BB** - black-box (only require a prediction function)\n - **BB\\*** - black-box but assume model is differentiable\n - **WB** - requires white-box model access. There may be limitations on models supported\n - **TF/Keras** - TensorFlow models via the Keras API\n - **Local** - instance specific explanation, why was this prediction made?\n - **Global** - explains the model with respect to a set of instances\n - **(1)** - depending on model\n - **(2)** - may require dimensionality reduction\n\n### Prototypes\nThese algorithms provide a **distilled** view of the dataset and help construct a 1-KNN **interpretable** classifier.\n\n|Method|Classification|Regression|Tabular|Text|Images|Categorical Features|Train set labels|\n|:-----|:-------------|:---------|:------|:---|:-----|:-------------------|:---------------|\n|[ProtoSelect](https://docs.seldon.io/projects/alibi/en/latest/methods/ProtoSelect.html)|\u2714| |\u2714|\u2714|\u2714|\u2714| Optional |\n\n\n## References and Examples\n- Accumulated Local Effects (ALE, [Apley and Zhu, 2016](https://arxiv.org/abs/1612.08468))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/ALE.html)\n - Examples:\n [California housing dataset](https://docs.seldon.io/projects/alibi/en/stable/examples/ale_regression_california.html),\n [Iris dataset](https://docs.seldon.io/projects/alibi/en/stable/examples/ale_classification.html)\n\n- Partial Dependence ([J.H. Friedman, 2001](https://projecteuclid.org/journals/annals-of-statistics/volume-29/issue-5/Greedy-function-approximation-A-gradient-boostingmachine/10.1214/aos/1013203451.full))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/PartialDependence.html)\n - Examples:\n [Bike rental](https://docs.seldon.io/projects/alibi/en/stable/examples/pdp_regression_bike.html)\n\n- Partial Dependence Variance([Greenwell et al., 2018](https://arxiv.org/abs/1805.04755))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/PartialDependenceVariance.html)\n - Examples:\n [Friedman\u2019s regression problem](https://docs.seldon.io/projects/alibi/en/stable/examples/pd_variance_regression_friedman.html)\n\n- Permutation Importance([Breiman, 2001](https://link.springer.com/article/10.1023/A:1010933404324); [Fisher et al., 2018](https://arxiv.org/abs/1801.01489))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/PermutationImportance.html)\n - Examples:\n [Who's Going to Leave Next?](https://docs.seldon.io/projects/alibi/en/stable/examples/permutation_importance_classification_leave.html)\n\n- Anchor explanations ([Ribeiro et al., 2018](https://homes.cs.washington.edu/~marcotcr/aaai18.pdf))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/Anchors.html)\n - Examples:\n [income prediction](https://docs.seldon.io/projects/alibi/en/stable/examples/anchor_tabular_adult.html),\n [Iris dataset](https://docs.seldon.io/projects/alibi/en/stable/examples/anchor_tabular_iris.html),\n [movie sentiment classification](https://docs.seldon.io/projects/alibi/en/stable/examples/anchor_text_movie.html),\n [ImageNet](https://docs.seldon.io/projects/alibi/en/stable/examples/anchor_image_imagenet.html),\n [fashion MNIST](https://docs.seldon.io/projects/alibi/en/stable/examples/anchor_image_fashion_mnist.html)\n\n- Contrastive Explanation Method (CEM, [Dhurandhar et al., 2018](https://papers.nips.cc/paper/7340-explanations-based-on-the-missing-towards-contrastive-explanations-with-pertinent-negatives))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/CEM.html)\n - Examples: [MNIST](https://docs.seldon.io/projects/alibi/en/stable/examples/cem_mnist.html),\n [Iris dataset](https://docs.seldon.io/projects/alibi/en/stable/examples/cem_iris.html)\n\n- Counterfactual Explanations (extension of\n [Wachter et al., 2017](https://arxiv.org/abs/1711.00399))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/CF.html)\n - Examples: \n [MNIST](https://docs.seldon.io/projects/alibi/en/stable/examples/cf_mnist.html)\n\n- Counterfactual Explanations Guided by Prototypes ([Van Looveren and Klaise, 2019](https://arxiv.org/abs/1907.02584))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/CFProto.html)\n - Examples:\n [MNIST](https://docs.seldon.io/projects/alibi/en/stable/examples/cfproto_mnist.html),\n [California housing dataset](https://docs.seldon.io/projects/alibi/en/stable/examples/cfproto_housing.html),\n [Adult income (one-hot)](https://docs.seldon.io/projects/alibi/en/stable/examples/cfproto_cat_adult_ohe.html),\n [Adult income (ordinal)](https://docs.seldon.io/projects/alibi/en/stable/examples/cfproto_cat_adult_ord.html)\n\n- Model-agnostic Counterfactual Explanations via RL([Samoilescu et al., 2021](https://arxiv.org/abs/2106.02597))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/CFRL.html)\n - Examples:\n [MNIST](https://docs.seldon.io/projects/alibi/en/stable/examples/cfrl_mnist.html),\n [Adult income](https://docs.seldon.io/projects/alibi/en/stable/examples/cfrl_adult.html)\n\n- Integrated Gradients ([Sundararajan et al., 2017](https://arxiv.org/abs/1703.01365))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/IntegratedGradients.html),\n - Examples:\n [MNIST example](https://docs.seldon.io/projects/alibi/en/stable/examples/integrated_gradients_mnist.html),\n [Imagenet example](https://docs.seldon.io/projects/alibi/en/stable/examples/integrated_gradients_imagenet.html),\n [IMDB example](https://docs.seldon.io/projects/alibi/en/stable/examples/integrated_gradients_imdb.html).\n\n- Kernel Shapley Additive Explanations ([Lundberg et al., 2017](https://papers.nips.cc/paper/7062-a-unified-approach-to-interpreting-model-predictions))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/KernelSHAP.html)\n - Examples:\n [SVM with continuous data](https://docs.seldon.io/projects/alibi/en/stable/examples/kernel_shap_wine_intro.html),\n [multinomial logistic regression with continous data](https://docs.seldon.io/projects/alibi/en/stable/examples/kernel_shap_wine_lr.html),\n [handling categorical variables](https://docs.seldon.io/projects/alibi/en/stable/examples/kernel_shap_adult_lr.html)\n \n- Tree Shapley Additive Explanations ([Lundberg et al., 2020](https://www.nature.com/articles/s42256-019-0138-9))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/TreeSHAP.html)\n - Examples:\n [Interventional (adult income, xgboost)](https://docs.seldon.io/projects/alibi/en/stable/examples/interventional_tree_shap_adult_xgb.html),\n [Path-dependent (adult income, xgboost)](https://docs.seldon.io/projects/alibi/en/stable/examples/path_dependent_tree_shap_adult_xgb.html)\n \n- Trust Scores ([Jiang et al., 2018](https://arxiv.org/abs/1805.11783))\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/TrustScores.html)\n - Examples:\n [MNIST](https://docs.seldon.io/projects/alibi/en/stable/examples/trustscore_mnist.html),\n [Iris dataset](https://docs.seldon.io/projects/alibi/en/stable/examples/trustscore_mnist.html)\n\n- Linearity Measure\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/LinearityMeasure.html)\n - Examples:\n [Iris dataset](https://docs.seldon.io/projects/alibi/en/stable/examples/linearity_measure_iris.html),\n [fashion MNIST](https://docs.seldon.io/projects/alibi/en/stable/examples/linearity_measure_fashion_mnist.html)\n\n- ProtoSelect\n - [Documentation](https://docs.seldon.io/projects/alibi/en/latest/methods/ProtoSelect.html)\n - Examples:\n [Adult Census & CIFAR10](https://docs.seldon.io/projects/alibi/en/latest/examples/protoselect_adult_cifar10.html)\n\n- Similarity explanations\n - [Documentation](https://docs.seldon.io/projects/alibi/en/stable/methods/Similarity.html)\n - Examples:\n [20 news groups dataset](https://docs.seldon.io/projects/alibi/en/stable/examples/similarity_explanations_20ng.html),\n [ImageNet dataset](https://docs.seldon.io/projects/alibi/en/stable/examples/similarity_explanations_imagenet.html),\n [MNIST dataset](https://docs.seldon.io/projects/alibi/en/stable/examples/similarity_explanations_mnist.html)\n\n## Citations\nIf you use alibi in your research, please consider citing it.\n\nBibTeX entry:\n\n```\n@article{JMLR:v22:21-0017,\n author = {Janis Klaise and Arnaud Van Looveren and Giovanni Vacanti and Alexandru Coca},\n title = {Alibi Explain: Algorithms for Explaining Machine Learning Models},\n journal = {Journal of Machine Learning Research},\n year = {2021},\n volume = {22},\n number = {181},\n pages = {1-7},\n url = {http://jmlr.org/papers/v22/21-0017.html}\n}\n```\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": null, "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "dynamic": null, "home_page": "https://github.com/SeldonIO/alibi", "keywords": null, "license": "Business Source License 1.1", "maintainer": null, "maintainer_email": null, "name": "alibi", "package_url": "https://pypi.org/project/alibi/", "platform": null, 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